BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005C09LP1|AL425353
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 880 0.0
3x_Contig1744 314 3e-85
>3x_Contig1582
Length = 14087
Score = 880 bits (435), Expect = 0.0
Identities = 464/480 (96%)
Strand = Plus / Minus
Query: 491 aatacaatgagattccgctaagaaagactctagtcgatgataawccgnacgnnagaagaa 550
|||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct: 14087 aatacattgagattccgctaagaaagactctagtcgatgataatccgtacgtgagaagaa 14028
Query: 551 ccgcggnactangcgttgcaaaaawgttccaattgaacccggacctatgccgtgaattgg 610
|||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14027 ccgcggtactatgcgttgcaaaattgttccaattgaacccggacctatgccgtgaattgg 13968
Query: 611 gcgtattgaacgawttgcaagacgctttgtctgacgataatccaatggttgttgccaacg 670
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13967 gcgtattgaacgatttgcaagacgctttgtctgacgataatccaatggttgttgccaacg 13908
Query: 671 cgctttycgcactgcacgaaattaacgaattggaccctggttcaatagatatcaagaaat 730
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13907 cgcttgccgcactgcacgaaattaacgaattggaccctggttcaatagatatcaagaaat 13848
Query: 731 tagtatctcaaaacgttaagaggtttttktwcgtgttgaacgaatgtacagaatgggcaa 790
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13847 tagtatctcaaaacgttaagaggtttttgaacgtgttgaacgaatgtacagaatgggcaa 13788
Query: 791 gaatcactattttggagtcattgagcgaacacaaaccaattgaccctatggagtctcaag 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13787 gaatcactattttggagtcattgagcgaacacaaaccaattgaccctatggagtctcaag 13728
Query: 851 aaattatcgatagagttgttccacatttgcaacacgtaaatccatcagtggtcttgatca 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13727 aaattatcgatagagttgttccacatttgcaacacgtaaatccatcagtggtcttgatca 13668
Query: 911 gtgttaaatgtatactcatacatctaccaaatttgaacacagtccatgactctatatwca 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 13667 gtgttaaatgtatactcatacatctaccaaatttgaacacagtccatgactctatataca 13608
>3x_Contig1744
Length = 24119
Score = 314 bits (155), Expect = 3e-85
Identities = 190/206 (92%), Gaps = 1/206 (0%)
Strand = Plus / Minus
Query: 7 ttatattcaagactctktccccaagcgattagtcttccttcctccagccaattgyttgct 66
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 ttatattcaagactctgtccccaagcgattagtcttccttcctccagccaattgcttgct 146
Query: 67 ctgctttctcataaataccaaggtgaaacaaagggtkttgataagaagawcaagaagttc 126
||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||
Sbjct: 145 ctgctttctcataaataccaagg-gaaacaatgggtgttgataagaagatcaagaagttc 87
Query: 127 ttaagagamgccawacgagtggctcctaaraattccaaaaaargtgaattgtttgaacaa 186
|||||||| |||| ||||||||||||||| | |||||| ||| ||||||||||||||| |
Sbjct: 86 ttaagagacgccatacgagtggctcctaagatttccaataaaggtgaattgtttgaacta 27
Query: 187 cgaaaaggaanagtatctcagtaccc 212
||||| ||| |||||||||||||||
Sbjct: 26 cgaaatggattagtatctcagtaccc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4548
Number of Sequences: 1807
Number of extensions: 4548
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 2
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.8 bits)
S2: 49 (99.7 bits)